Publications
2023
Sanchez et al. (2023). Expansion of novel biosynthetic gene clusters from diverse environments using SanntiS. BioRxiv – The Preprint Server For Biology.
2024
Galgonek J, Vondrášek J (2024). The IDSM mass spectrometry extension: searching mass spectra using SPARQL. Bioinformatics. 2024 Apr btae174.
Vermeulen et al. (2024). Initial Characterization of the Viridisins’ Biological Properties. ACS Omega. July 9, 2024.
Duchêne, C., Bouly, JP., Pierella Karlusich, J.J. et al. Diatom phytochromes integrate the underwater light spectrum to sense depth. Nature (2024).
Martínez-Antequera, F.P., Gilannejad, N., Menanteau-Ledouble, S. et al. Testing the inhibitory effects of different algal extracts on fish intestinal metalloproteases using in vitro assays. J Appl Phycol (2025).
Sett, S., Kress, W.J., Halewood, M. et al. Harmonize rules for digital sequence information benefit-sharing across UN frameworks. Nat Commun 15, 8745 (2024).
Villar, E., Zweig, N., Vincens, P., Cruz de Carvalho, H., Duchene, C., Liu, S., Monteil, R., Dorrell, R. G., Fabris, M., Vandepoele, K., Bowler, C., & Falciatore, A. (2024). DiatOmicBase, a gene-centered platform to mine functional omics data across diatom genomes.
El Hourany, R., Pierella Karlusich, J., Zinger, L., Loisel, H., Levy, M., and Bowler, C.: Linking satellites to genes with machine learning to estimate phytoplankton community structure from space, Ocean Sci., 20, 217–239,
Laude J, Scarsini M, Nef C, Bowler C. (2024) Evolutionary conservation and metabolic significance of autophagy in algae. Phil. Trans. R. Soc. B 379: 20230368.
Nef C, Pierella Karlusich JJ, Bowler C. (2024) From nets to networks: tools for deciphering phytoplankton metabolic interactions within communities and their global significance. Phil. Trans. R. Soc. B 379: 20230172.
Aleku GA, Hollfelder F. (2024) Expanding the repertoire of imine reductases by mining divergent biosynthetic pathways for promiscuous reactivity. Chem Catal.
2025
Humphries et. al. (2025). Decoding Marine Genetic Resources Governance Under the BBNJ Agreement. Sustainable Development Goal Series.
Jiraskova K., Ptacek J., Vydra Bousova K., Vondrasek J. (2025). Toward reproducible PETase research: A standardized workflow for reliable enzyme production and comparison. Protein Expression and Purification.
Casolari F., Westmoreland A., Vanagt T., Jaspars M. (2025) Unpacking policy developments in marine natural product research: a scientist’s guide to DSI and BBNJ. Natural Product Reports
Pierella Karlusich, J.J., Cosnier, K., Zinger, L. et al. (2025) Patterns and drivers of diatom diversity and abundance in the global ocean. Nat Commun 16, 3452
Penner et al. (2025) Fluorogenic, Subsingle-Turnover Monitoring of Enzymatic Reactions Involving NAD(P)H Provides a Generalized Platform for Directed Ultrahigh-Throughput Evolution of Biocatalysts in Microdroplets. Journal of the American Chemical Society, Vol. 147/Issue 13