Publications

2023

Sanchez et al. (2023). Expansion of novel biosynthetic gene clusters from diverse environments using SanntiS. BioRxiv – The Preprint Server For Biology. 

DOI: https://doi.org/10.1101/2023.05.23.540769

2024

Galgonek J, Vondrášek J (2024). The IDSM mass spectrometry extension: searching mass spectra using SPARQL. Bioinformatics. 2024 Apr btae174.

DOI: https://doi.org/10.1093/bioinformatics/btae174

Vermeulen et al. (2024). Initial Characterization of the Viridisins’ Biological Properties. ACS Omega. July 9, 2024.

DOI: https://doi.org/10.1021/acsomega.4c03149

Duchêne, C., Bouly, JP., Pierella Karlusich, J.J. et al. Diatom phytochromes integrate the underwater light spectrum to sense depth. Nature (2024).

DOI: https://doi.org/10.1038/s41586-024-08301-3

Martínez-Antequera, F.P., Gilannejad, N., Menanteau-Ledouble, S. et al. Testing the inhibitory effects of different algal extracts on fish intestinal metalloproteases using in vitro assays. J Appl Phycol (2025). 

DOI: https://doi.org/10.1007/s10811-024-03440-6

Sett, S., Kress, W.J., Halewood, M. et al. Harmonize rules for digital sequence information benefit-sharing across UN frameworks. Nat Commun 15, 8745 (2024).

DOI: https://doi.org/10.1038/s41467-024-52994-z

 

Villar, E., Zweig, N., Vincens, P., Cruz de Carvalho, H., Duchene, C., Liu, S., Monteil, R., Dorrell, R. G., Fabris, M., Vandepoele, K., Bowler, C., & Falciatore, A. (2024). DiatOmicBase, a gene-centered platform to mine functional omics data across diatom genomes.

DOI: https://doi.org/10.1101/2024.09.12.612655

 

El Hourany, R., Pierella Karlusich, J., Zinger, L., Loisel, H., Levy, M., and Bowler, C.: Linking satellites to genes with machine learning to estimate phytoplankton community structure from space, Ocean Sci., 20, 217–239,

DOI: https://doi.org/10.5194/os-20-217-2024

 

Laude J, Scarsini M, Nef C, Bowler C. 2024 Evolutionary conservation and metabolic significance of autophagy in algae. Phil. Trans. R. Soc. B 379: 20230368.

DOI: https://doi.org/10.1098/rstb.2023.0368

 

Nef C, Pierella Karlusich JJ, Bowler C. 2024 From nets to networks: tools for deciphering phytoplankton metabolic interactions within communities and their global significance. Phil. Trans. R. Soc. B 379: 20230172.

DOI: https://doi.org/10.1098/rstb.2023.0172